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That swagman had a history, highly important, at all events, to himself. He had been born; he lived; he would probably die - and if any human being wants a higher record than that, he must work for it. Publications |
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Potapov, A., Yagi, H., Huber, T., Jergic, S., Dixon, N.E., Otting G. and Goldfarb, D.
Nanometer-Scale Distance Measurements in Proteins Using Gd3+ Spin Labeling. JACS (2010) . [Supplementary information] |
 0 citations |
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Yagi, H., Loscha, K.V., Su, X-C., Stanton-Cook, M.J., Huber, T. and Otting G. Tunable paramagnetic relaxation enhancements by [Gd(DPA)3]3- for protein structure analysis J. Biomol. NMR (2010) 47 143-153. [Supplementary information] |
0 citation |
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Man, B., Su, X-C., Liang, H., Simonsen, S., Huber, T., Messerle, B.A. and Otting, G. 3-Mercapto-2,6-Pyridinedicarboxylic Acid: A Small Lanthanide-Binding Tag for Protein Studies by NMR Spectroscopy Chem. Eur. J. (2010) 16 3827-3832. [Supplementary information] |
0 citation |
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Li, R., Ding, T., Huber T., Falconer, R.J., Middelberg, A., Gladden, L.F. and Zeitler, J.A. Terahertz time-domain spectroscopy of peptides in solution. This paper appears in: Infrared, Millimeter, and Terahertz Waves, 2009. IRMMW-THz 2009. 34th International Conference on (2009), 1-2. |
0 citations |
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Li, S, Mouradov, D., King, G., Liu, T., Ross, I., Kobe, B., Woods Jr, V.L. and Huber T.
Study of protein three-dimensional structure and dynamics using peptide amide hydrogen/deuterium exchange mass spectrometry (DXMS) and chemical cross-linking with mass spectrometry to constrain molecular modeling. Chapter 7 in Structural Bioinformatics 2nd edition Wiley-Blackwell (2009). |
book chapter |
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Kobe, B., Guncar, G., Buchholz, R., Huber, T. and Maco, B.
The Many Faces Of Platelet Glycoprotein Ibα - Thrombin Interaction. Current Protein & Peptide Science (2009) 10 551-558. |
0 citations |
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Kobe, B., Guncar, G., Buchholz, R., Huber T., Maco, B., Cowieson, N., Martin, J.L., Marfori, M. and Forwood, J.
Crystallography and protein-protein interactions: biological interfaces and crystal contacts. Biochemical Society Transactions (2008) 36 1438-1441. |
0 citations |
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Hadler, K.S, Huber, T., Cassady, I., Weber, J., Robinson, J., Burrows, A., Kelly, G., Guddat, L.W., Hume, D.A., Schenk G. and Flanagan, J.U.
Identification of a non-purple tartrate-resistant acid phosphatase: an evolutionary link to Ser/Thr protein phosphatases? BMC Research Notes (2008) 1 78. [PDF] |
1 citations |
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Su, X.-C., Man, B., Beeren, S., Liang, H., Simonsen, S., Schmitz, C., Huber, T., Messerle, B.A. and Otting, G.
A Dipicolinic Acid Tag for Rigid Lanthanide Tagging of Proteins and Paramagnetic NMR Spectroscopy. JACS (2008) 130 10486-10487. |
0 citations |
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Schmitz, C., Stanton-Cook, M.J., Su, X-C., Otting, G. and Huber, T.
Numbat: an interactive software tool for fitting deltaX-tensors to molecular coordinates using pseudocontact shifts J. Biomol. NMR (2008) 41 179-189. [Supplementary information] |
1 citation |
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Saunders, N.F.W., Brinkworth, R.I., Huber, T., Kemp, B.E. and Kobe, B.
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites BMC Bioinformatics (2008) 9 245. [PDF] |
0 citations |
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King, G.J., Jones, A., Kobe, B., Huber, T., Mouradov, D., Hume, D.A. and Ross, I.L.
Rapid identification of disulfide-containing chemical cross-links in proteins using MALDI-TOF/TOF-mass spectrometry. Analytical Chemistry (2008) 80 5036-5043. |
3 citation |
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Cowieson, N.P., King, G., Cookson, D., Ross, I., Huber, T., Hume, D.A., Kobe B., Martin, J.L.,
Cortactin adopts a globular conformation and bundles actin into sheets. JBC (2008) 283 16187-16193. [Supplementary information] |
6 citations |
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Su, X.-C., McAndrew, K., Huber, T., Otting, G.,
Lanthanide-Binding Peptides for NMR Measurements of Residual Dipolar Couplings and Paramagnetic Effects from Multiple Angles. JACS (2008) 130 1681-1687. [Supplementary information] |
3 citations |
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Jiangning Song, Zheng Yuan, Hao Tan, Thomas Huber and Kevin Burrage,
Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure. Bioinformatics (2007) 23 3147-3154. |
2 citations |
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John, M., Schmitz, C., Park, A-Y., Dixon, N.E., Huber, T. and Otting, G.
Sequence-specific and stereospecific assignment of methyl groups using paramagnetic lanthanides JACS (2007) 129 13749-13757. |
1 citations |
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Forwood, J.K., Thakur, A., Guncar, G., Marfori, M., Mouradov, D., Meng, W.N., Robinson, J., Huber, T., Kellie, S., Martin, J.L., Hume, D.A., and Kobe, B.
Structural basis for recruitment of tandem hotdog domains in acyl-CoA thioesterase 7 and its role in inflammation PNAS (2007) 104 10382-10387. |
11 citations |
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Flanagan, J.U. and Huber T.,
Structural evolution of the ABCB family of transporter proteins. Evolutionary Bioinformatics (2007), 309-316. [Figure 1][Figure 2] |
0 citations |
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Mouradov D, King G, Ross I, Forwood JK, Hume DA, Sinz A, Martin JL, Kobe B and Huber T.
Protein structure determination using a combination of cross-linking, mass spectrometry and molecular modelling. In Methods in Molecular Biology v. 426 Humana Press (2008). |
book chapter |
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Meng W, Forwood JK, Guncar G, Robin G, Cowieson NP, Listwan P, Mouradov D, King G, Ross IL, Robinson J, Puri M, Hill JM, Kellie S, Huber T, Hume DA, Martin JL and Kobe B
Overview of the pipeline for structural and functional characterization of macrophage proteins at the University of Queensland. In Methods in Molecular Biology v. 426 Humana Press (2008). |
book chapter |
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Robin G, Cowieson NP, Guncar G, Forwood JK, Listwan P, Hume DA, Kobe B, Martin JL and Huber T
A general target selection method for crystallographic proteomics. In Methods in Molecular Biology v. 426 Humana Press (2008). |
book chapter |
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Su, X-C., Huber, T., Dixon, N.E. and Otting, G.
Site-Specific Labelling of Proteins with a Rigid Lanthanide-Binding Tag ChemBioChem 7 (2006) 1599-1604. |
4 citations |
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DeSantis, T.Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E.L., Keller, K., Huber, T., Dalevi, D., Hu, P., Andersen, G.L.
greengenes: Chimera-checked 16S rRNA gene database and workbench compatible with ARB Appl. Environ. Microbiol. (2006) 72 5069-5072. |
165 citations |
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Puri, M., Robin, G., Cowieson, N., Forwood, J.K., Listwan, P., Guncar, G., Hu, G., Huber, T., Hume, D.A., Kobe, B., and Martin, J.L.
Focusing in on structural genomics: The University of Queensland structural biology pipeline Biomolecular Engineering 23 281-289. |
4 citations |
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Hamilton, N. and Huber, T.
An Introduction to Protein Contact Prediction in Bioinformatics (Ed. Keith, J.M.) Humana Press 2008. |
book chapter |
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Song, J., Burrage, K., Yuan, Z. and Huber, T.
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information BMC Bioinformatics (2006) 7 124. [PDF] |
17 citations |
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Schmitz, C., John, M., Park, A.Y., Dixon, N.E., Otting, G., Pintacuda, G. and Huber, T.
Efficient chi-tensor determination and NH assignment of paramagnetic proteins J. Biomol. NMR (2006) 35 79-87. [Supplementary information] |
7 citations |
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Mouradov, D., Craven, A., Forwood, J., Flanagan, J., Garcia-Castellanos, R., Gomis-Ruth, F.X., Hume, D., Martin, J., Kobe, B. and Huber, T.
Modelling the structure of latexin-carboxypeptidase A complex based on chemical cross-linking and molecular docking Protein Engineering, Design & Selection (2006) 19 9-16. |
7 citations |
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Ozawa, K., Headlam, M.J., Mouradov, D., Watt, S.J., Beck, J.L., Rodgers, K.J., Dean, R.T., Huber, T., Otting, G. and Dixon, N.E.,
Translational incorporation of L-3,4-dihydroxyphenylalanine (DOPA) into proteins. Eur. J. Biochem. (2005) 272 3162-3171. |
14 citations |
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Cowieson, N., Listwan, P., Kurz, M., Aagaard, A., Ravasi, T., Wells, C., Huber, T., Hume, D.A., Kobe, B. and Martin, J.L.,
Pilot studies on the parallel production of soluble mouse proteins in a bacterial expression system. J Struct Funct Genom (2005) 6 13-20. |
5 citations |
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Aagaard, A., Listwan, P., Cowieson, N., Huber, T., Ravasi, T., Wells, C., Flanagan, J.U., Kellie, S., Hume, D.A., Kobe, B. and Martin, J.L.
An inflammatory role for the mammalian carboxypeptidase inhibitor latexin: relationship to cystatins and the tumour suppressor TIG1. Structure (2005) 17 309-317. |
22 citations |
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Pintacuda, G., Huber, T., Keniry, M., Park, Y.A, Dixon, N.E. and Otting, G.,
Fast assignments of 15N-HSQC spectra of proteins by paramagnetic labelling Handbook of Modern Magnetic Resonance (2004). |
book chapter |
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Huber, T. and Kobe, B.,
Comment on 'Protein Isoelectric Point as a Predictor for Increased Crystallization Screening Efficiency Bioinformatics (2004) 20 2169-2170. |
1 citations |
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Torda, A.E., Procter J. and Huber, T.,
Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices Nucl. Acid Res. (2004) 32 W532-W535. |
25 citations |
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Hamilton, N., Burrage, K., Ragan M.A. and Huber, T.,
Protein contact prediction using patterns of correlation Proteins (2004) 56 (4), 679-684. |
29 citations |
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Xu, Y., Zhang, R., Joachimiak, A., Carr, P.D., Huber, T., Vasudevan, S.G. and Ollis, D.,
Structure of the N-termial domain of Escherichia coli Glutamine Synthetase Adenylyltransferase Structure (2004) 12, 861-869. |
9 citations |
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Huber, T., Faulkner, G. and Hugenholtz, P.,
Bellerophon; a program to detect chimeric sequences in multiple sequence alignments Bioinformatics (2004) 20, 2317-2319. |
272 citations |
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Pintacuda, G., Keniry, M., Huber, T., Park, Y.A, Dixon, N.E. and Otting, G.,
Fast structure-based assignment of 15N-HSQC spectra of selectively labeled paramagnetic proteins JACS (2004) 126, 2963-2970. |
37 citations |
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Gladwin, B.A. and Huber, T.,
Long Time Scale Molecular Dynamics Using Least Action ANZIAM J. (2004) 45.C534--C550 |
2 citations |
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Ravasi, T., Huber, T., Zavolan, M., Forrest, A.R.R., Gaasterland, T., Grimmond, S., RIKEN GER Group GSL Members and Hume, D.A.
Systematic Characterization of the Zinc-Finger-Containing Proteins in the Mouse Transcriptome Genome Research (2003) 13, 1430-1442. |
32 citations |
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Forrest, A.R.R., Ravasi, T., Taylor, D., Huber, T., Hume, D.A., RIKEN GER Group GSL Members and Grimmond, S.,
Phosphoregulators: Protein Kinases and Protein Phosphatases of Mouse Genome Research (2003) 13, 1443-1454. |
20 citations |
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Hugenholtz, P. and Huber, T.,
Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases. Int J Syst Evol Microbiol (2003) 53, 289-293. (selected by Microbiology Today Editor Meriel Jones as a paper "which highlight new and exciting developments in microbiological research") |
102 citations |
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Huber, T. and Torda, A.E.,
Protein structure prediction by threading: Force field philosophy, approaches to alignment. in Protein Structure Prediction: A Bioinformatic Approach (Ed. Tsigelny, I.) International University Line, La Jolla U.S.A. (2001). |
book chapter |
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Huber, T.,
Bayesian classification of protein data. HPC Asia. (2001). |
0 citations |
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Xu, Y., Carr, P.D., Huber, T., Vasudevan, S.G., Ollis, D.L.,
The structure of the PII-ATP complex. Eur. J. Biochem. (2001), 268,2028-2037. |
34 citations |
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Reith, D., Huber, T., Müller-Plathe, F., Torda, A.E.,
Free Energy Approximations In Simple Lattice Proteins. J. Chem. Phys. (2001) 114, 4998-5005. |
6 citations |
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Rendell, A.P., Bliznyuk, A., Huber T., Nobes, R.H., Akhmatskaya, E.V., Früchtl, H.A., Kunk, P.W.-C., Milman, V.A., Lung, H.,
Computational chemistry on Fujitsu vector-parallel processors: Development and performance of application software. Parallel Computing 26 (2000), 887-911. |
4 citations |
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Huber, T., Russell, A.J., Ayers, D, Torda, A.E.,
SAUSAGE: Protein threading with flexible force fields. Bioinformatics 15 (1999), 1064-1065. |
18 citations |
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Ayers, D., Huber, T. and Torda, A.E.,
Protein fold recognition force fields: unusual construction strategies. Proteins 36 (1999) 454-461. |
6 citations |
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Huber, T. and Torda, A.E.,
Protein sequence threading, the alignment problem and a two step strategy. J. Comp. Chem. 20 (1999) 1455-1467. |
10 citations |
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Scott, W.R.P, Hünenberger, P.H., Tironi, I.G., Mark, A.E., Billeter, S.R., Fennen, J., Torda, A.E., Huber, T., Krüger, P. and van Gunsteren, W.F.,
The GROMOS biomolecular simulation program package. J. Phys. Chem. A 103 (1999) 3596-3607. |
403 citations |
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Rendell, A., Bliznyuk A, Huber, T., Gready J., Greatbanks, S. and Schmidt,R.,
Hybrid quantum mechanical/molecular mechanical (QM/MM) studies of enzyme reaction mechanisms: Building the computational engine. HPC Asia (1998). |
conference proceeding |
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Huber, T. and van Gunsteren, W.F.,
SWARM-MD: searching conformational space by cooperative molecular dynamics. J. Phys. Chem. A 102 (1998) 5937-5943. |
24 citations |
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Huber, T. and Torda, A.E.,
Protein fold recognition without Boltzmann statistics or explicit physical basis. Prot. Sci. 7 (1998) 1-8. |
26 citations |
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Huber, T., Torda, A.E. and van Gunsteren, W.F.,
Structure optimisation combining soft-core interaction functions, the diffusion equation method and molecular dynamics. J. Phys. Chem. A 101 (1997) 5926-5930. |
23 citations |
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Nanzer, P.A., Huber, T., Torda, A.E., van Gunsteren, W.F.,
Molecular dynamics simulation using weak-coupling NOE distance restraining. J. Biomol. NMR 8 (1996) 285-291. |
3 citations |
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Huber, T., Torda, A.E., van Gunsteren, W.F.,
Optimization methods for conformational sampling using a Boltzmann weighted mean field approach. Biopolymers 39 (1996), 103-114. |
14 citations |
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van Gunsteren W.F., Huber T., Torda A.E.,
Biomolecular modelling: Overview of types of methods to search and sample conformational space, Proceedings of the 1st European Conference on Computational Chemistry, American Institute of Physics Conf. Proc., New York (1994). |
8 citations |
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Huber T., Torda A.E., van Gunsteren W.F.,
Local Elevation: A method for improving the searching properties of molecular dynamics, J. Comp.-Aided Mol. Design, 8 (1994), 695-708. |
69 citations |
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Mierke D.F., Huber T., Kessler H.,
Coupling constants again: Experimental restraints in structure refinement, J. Comp.-Aided Mol. Design, 8 (1994), 29-40. |
13 citations |
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Torda A.E., Brunne R.M., Huber T., Kessler H., van Gunsteren W.F.,
Structure refinement using time averaged J-coupling constant restraints, J. Biomol. NMR, 3 (1993), 55-66. |
49 citations |
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Huber, T. and Rendell, A.,
Molecular dynamics simulations using GRAPE/Wine hardware, June 1999. |
0 citations |
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Biology and bioinformatics Environment The University of Queensland Brisbane, Queensland 4072 Australia Phone: +61 (7) 3346 9073 Fax: +61 (7) 3365 6136 Email: t.huber at uq.edu.au Web: http://compbio.chemistry.uq.edu.au/bmmg |
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