citations2005
































Work that cited Bellerophon

Papers (59)

  • Greenwood SJ, Despres BAM, Cawthorn RJ, et al.
    Case report: Outbreak of bumper car disease caused by Anophryoides haemophila in a lobster holding facility in Nova Scotia, Canada

    JOURNAL OF AQUATIC ANIMAL HEALTH 17 (4): 345-352 DEC 2005


  • Anne K. Dunn and Eric V. Stabb
    Culture-Independent Characterization of the Microbiota of the Ant Lion Myrmeleon mobilis (Neuroptera: Myrmeleontidae)

    Appl. Environ. Microbiol. 2005 71: 8784-8794. DEC 2005


  • Duane P. Moser, Thomas M. Gihring,Fred J. Brockman, James K. Fredrickson, David L. Balkwill, Michael E. Dollhopf, Barbara Sherwood Lollar, Lisa M. Pratt, Erik Boice, Gordon Southam, Greg Wanger, Brett J. Baker, Susan M. Pfiffner, Li-Hung Lin, and T. C. Onstott
    Desulfotomaculum and Methanobacterium spp. Dominate a 4- to 5-Kilometer-Deep Fault

    Appl. Environ. Microbiol. 2005 71: 8773-8783. DEC 2005


  • Thomas E. Freitag, Lisa Chang, Christopher D. Clegg, and James I. Prosser
    Influence of Inorganic Nitrogen Management Regime on the Diversity of Nitrite-Oxidizing Bacteria in Agricultural Grassland Soils

    Appl. Environ. Microbiol. 2005 71: 8323-8334. DEC 2005


  • Kevin E. Ashelford, Nadia A. Chuzhanova, John C. Fry, Antonia J. Jones, and Andrew J. Weightman
    At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial Anomalies

    Appl. Environ. Microbiol. 2005 71: 7724-7736. DEC 2005


  • Yaovapa Taprab, Toru Johjima, Yoshimasa Maeda, Shigeharu Moriya, Savitr Trakulnaleamsai, Napavarn Noparatnaraporn, Moriya Ohkuma, and Toshiaki Kudo
    Symbiotic Fungi Produce Laccases Potentially Involved in Phenol Degradation in Fungus Combs of Fungus-Growing Termites in Thailand

    Appl. Environ. Microbiol. 2005 71: 7696-7704. DEC 2005


  • Brown MV, Fuhrman JA
    Marine bacterial microdiversity as revealed by internal transcribed spacer analysis

    AQUATIC MICROBIAL ECOLOGY 41 (1): 15-23 NOV 11 2005


  • Takeshi Yamada, Yuji Sekiguchi, Hiroyuki Imachi, Yoichi Kamagata, Akiyoshi Ohashi, and Hideki Harada
    Diversity, Localization, and Physiological Properties of Filamentous Microbes Belonging to Chloroflexi Subphylum I in Mesophilic and Thermophilic Methanogenic Sludge Granules

    Appl. Environ. Microbiol. 2005 71 (11): 7493-7503 NOV 2005


  • Ketil Bernt Sorensen, Donald E. Canfield, Andreas P. Teske, and Aharon Oren
    Community composition of a hypersaline endoevaporitic microbial mat

    Appl. Environ. Microbiol. 2005 71 (11): 7352-7365 NOV 2005


  • Yuichi Hongoh, Pinsurang Deevong, Tetsushi Inoue, Shigeharu Moriya, Savitr Trakulnaleamsai, Moriya Ohkuma, Charunee Vongkaluang, Napavarn Noparatnaraporn, and Toshiaki Kudo
    Intra- and Interspecific Comparisons of Bacterial Diversity and Community Structure Support Coevolution of Gut Microbiota and Termite Host

    Appl. Environ. Microbiol. 2005 71 (11): 6590-6599 NOV 2005


  • Lisa M. Stout and Klaus Nuesslein
    Shifts in Rhizoplane Communities of Aquatic Plants after Cadmium Exposure

    Appl. Environ. Microbiol. 2005 71 (11): 2484-2492 NOV 2005


  • Tatsuo Miyoshi, Teruki Iwatsuki, and Takeshi Naganuma
    Phylogenetic Characterization of 16S rRNA Gene Clones from Deep-Groundwater Microorganisms That Pass through 0.2-Micrometer-Pore-Size Filters

    Appl. Environ. Microbiol. 2005 71 (11): 1084-1088.


  • Sophie von der Heyden and Thomas Cavalier-Smith
    Culturing and environmental DNA sequencing uncover hidden kinetoplastid biodiversity and a major marine clade within ancestrally freshwater Neobodo designis

    Int J Syst Evol Microbiol 2005 55: 2605-2621 NOV 2005


  • Qingwei Luo, Lee R. Krumholz, Fares Z. Najar, Aaron D. Peacock, Bruce A. Roe, David C. White, and Mostafa S. Elshahed
    Diversity of the Microeukaryotic Community in Sulfide-Rich Zodletone Spring (Oklahoma)

    Appl. Environ. Microbiol. 2005 71 (10): 6175-6184 OCT 2005


  • Wang M, Ahrne S, Jeppsson B, et al.
    Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes

    FEMS MICROBIOLOGY ECOLOGY 54 (2): 219-231 OCT 1 2005


  • Pichon D, Gaia V, Norman MD, et al.
    Phylogenetic diversity of epibiotic bacteria in the accessory nidamental glands of squids (Cephalopoda : Loliginidae and Idiosepiidae)

    MARINE BIOLOGY 147 (6): 1323-1332 OCT 2005


  • Nagy ML, Perez A, Garcia-Pichel F
    The prokaryotic diversity of biological soil crusts in the Sonoran Desert (Organ Pipe Cactus National Monument, AZ)

    FEMS MICROBIOLOGY ECOLOGY 54 (2): 233-245 OCT 1 2005


  • Slapeta J, Moreira D, Lopez-Garcia P
    The extent of protist diversity: insights from molecular ecology of freshwater eukaryotes

    PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 272 (1576): 2073-2081 OCT 7 2005


  • Walsh DA, Papke RT, Doolittle WF
    Archaeal diversity along a soil salinity gradient prone to disturbance

    ENVIRONMENTAL MICROBIOLOGY 7 (10): 1655-1666 OCT 2005


  • Gonzalez JM , Zimmermann J, Saiz-Jimenez C
    Evaluating putative chimeric sequences from PCR-amplified products

    Bioinformatics Vol 21 no 3 333-337 SEP 2005


  • Pernthaler J, Amann R
    Fate of heterotrophic microbes in pelagic habitats: Focus on populations

    MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS 69 (3): 440-461 SEP 2005


  • Gonzalez JM , Saiz-Jimenez C
    Application of molecular nucleic acid-based techniques for the study of microbial communities in monuments and artworks

    International Microbiology 8 189-194 2005


  • Simon HM, Jahn CE, Bergerud LT, et al.
    Cultivation of mesophilic soil crenarchaeotes in enrichment cultures from plant roots

    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71 (8): 4751-4760 AUG 2005


  • Krimm U, Abanda-Nkpwatt D, Schwab W, et al.
    Epiphytic microorganisms on strawberry plants (Fragaria ananassa cv. Elsanta): identification of bacterial isolates and analysis of their interaction with leaf surfaces

    FEMS MICROBIOLOGY ECOLOGY 53 (3): 483-492 AUG 1 2005


  • D. R. MEYER-DOMBARD, E. L. SHOCK AND J. P. AMEND,
    Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA

    Geobiology 3: 211-227 July 2005


  • Osborne CA, Galic M, Sangwan P, et al.
    PCR-generated artefact from 16S rRNA gene-specific primers

    FEMS MICROBIOLOGY LETTERS 248 (2): 183-187 JUL 15 2005


  • Takishita K, Miyake H, Kawato M, et al.
    Genetic diversity of microbial eukaryotes in anoxic sediment around fumaroles on a submarine caldera floor based on the small-subunit rDNA phylogeny

    EXTREMOPHILES 9 (3): 185-196 JUN 2005


  • Dick LK, Bernhard AE, Brodeur TJ, et al.
    Host distributions of uncultivated fecal Bacteroidales bacteria reveal genetic markers for fecal source identification

    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71 (6): 3184-3191 JUN 2005


  • Hobel CFV, Marteinsson VT, Hreggvidsson GO, et al.
    Investigation of the microbial ecology of intertidal hot springs by using diversity analysis of 16S rRNA and chitinase genes

    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71 (5): 2771-2776 MAY 2005


  • Fuchs BM, Woebken D, Zubkov MV, et al.
    Molecular identification of picoplankton populations in contrasting waters of the Arabian Sea

    AQUATIC MICROBIAL ECOLOGY 39 (2): 145-157 MAY 30 2005


  • Berglund J, Jurgens K, Bruchmuller I, et al.
    Use of group-specific PCR primers for identification of chrysophytes by denaturing gradient gel electrophoresis

    AQUATIC MICROBIAL ECOLOGY 39 (2): 171-182 MAY 30 2005


  • Zhang H, Logan BE, Regan JM, et al.
    Molecular assessment of inoculated and indigenous bacteria in biofilms from a pilot-scale perchlorate-reducing bioreactor

    MICROBIAL ECOLOGY 49 (3): 388-398 APR 2005


  • Kjellerup BV, Veeh RH, Sumithraratne P, et al.
    Monitoring of microbial souring in chemically treated, produced-water biofilm systems using molecular techniques

    JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY 32 (4): 163-170 APR 2005


  • Tringe SG,von Mering C,Kobayashi A,Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM
    Comparative Metagenomics of Microbial Communities

    Science, Vol 308, Issue 5721, 554-557 , 22 April 2005
    • Supporting material



  • Blankenship LE, Yayanos AA
    Universal primers and PCR of gut contents to study marine invertebrate diets

    MOLECULAR ECOLOGY 14 (3): 891-899 MAR 2005


  • Kjellerup BV, Thomsen TR, Nielsen JL, et al.
    Microbial diversity in biofilms from corroding heating systems

    BIOFOULING 21 (1): 19-29 FEB 2005


  • Greenwood SJ, Keith IR, Despres AM, et al.
    Genetic characterization of the lobster pathogen Aerococcus viridans var. homari by 16S rRNA gene sequence and RAPD

    DISEASES OF AQUATIC ORGANISMS 63 (2-3): 237-246 FEB 28 2005


  • Miyoshi T, Iwatsuki T, Naganuma T
    Phylogenetic characterization of 16S rRNA gene clones from deep-groundwater microorganisms that pass through 0.2-micrometer-pore-size filters

    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71 (2): 1084-1088 FEB 2005


  • Krueger D, Gargas A
    The basidiomycete genusPolyporus- an emendation based on phylogeny and putative secondary structure …

    Feddes Repertorium 115 (2004) 7-8, 530-546.


  • Iyer P, Bruns MA, Zhang HS, et al.
    H-2-producing bacterial communities from a heat-treated soil inoculum

    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 66 (2): 166-173 DEC 2004


  • Weir BS, Turner SJ, Silvester WB, et al.
    Unexpectedly diverse Mesorhizobium strains and Rhizobium leguminosarum nodulate native legume genera of New Zealand, while introduced legume weeds are nodulated by Bradyrhizobium species

    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 70 (10): 5980-5987 OCT 2004


  • Huber T, Faulkner G, Hugenholtz P
    Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

    BIOINFORMATICS 20 (14): 2317-2319 SEP 22 2004


  • Acinas SG, Klepac-Ceraj V, Hunt DE, et al.
    Fine-scale phylogenetic architecture of a complex bacterial community

    NATURE 430 (6999): 551-554 JUL 29 2004


  • Sorensen KB, Lauer A, Teske A
    Archaeal phylotypes in a metal-rich and low-activity deep subsurface sediment of the Peru Basin, ODPLeg201, Site 1231

    Geobiology 2: 151-161 2004


  • Inglis GD, Kalischuk LD, Busz HW
    Chronic shedding of Campylobacter species in beef cattle

    JOURNAL OF APPLIED MICROBIOLOGY 97 (2): 410-420 2004


  • Berney C, Fahrni J, Pawlowski J
    How many novel eukaryotic'kingdoms'? Pitfalls and limitations of environmental DNA surveys

    BMC Biology 2004 2:13


  • Forney LJ, Zhou X, Brown CJ
    Molecular microbial ecology: land of the one-eyed king

    CURRENT OPINION IN MICROBIOLOGY 7 (3): 210-220 JUN 2004


  • Verhelst R, Verstraelen H, Claeys G, et al.
    Cloning of 16S rRNA genes amplified from normal and disturbed vaginal microflora suggests a strong association between Atopobiurn vaginae, Gardnerella vaginalis and bacterial vaginosis

    BMC MICROBIOLOGY 4: Art. No. 16 APR 21 2004


  • Boucher Y, Douady CJ, Sharma AK, et al.
    Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes

    JOURNAL OF BACTERIOLOGY 186 (12): 3980-3990 JUN 2004


  • Roose-Amsaleg C, Brygoo Y, Harry M
    Ascomycete diversity in soil-feeding termite nests and soils from a tropical rainforest

    ENVIRONMENTAL MICROBIOLOGY 6 (5): 462-469 MAY 2004


  • Thomsen TR, Nielsen JL, Ramsing NB, et al.
    Micromanipulation and further identification of FISH-labelled microcolonies of a dominant denitrifying bacterium in activated sludge

    ENVIRONMENTAL MICROBIOLOGY 6 (5): 470-479 MAY 2004


  • Sliwinski MK, Goodman RM
    Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling

    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 70 (3): 1811-1820 MAR 2004


  • Pei A, Bini, EJ Yang L, Zhou M, Francois F, Blaser MJ
    Bacterial biota in the human esophagus

    Proceedings of the National Academy of Sciences USA 101 (12): 4250-4255 MAR 2004


  • Neufeld JD, Yu ZT, Lam W, et al.
    Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities

    ENVIRONMENTAL MICROBIOLOGY 6 (2): 131-144 FEB 2004


  • Thalmann O, Hebler J, Poinar HN, et al.
    Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes

    MOLECULAR ECOLOGY 13 (2): 321-335 FEB 2004


  • Haynes S, Darby AC, Daniell TJ, et al.
    Diversity of bacteria associated with natural aphid populations

    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 69 (12): 7216-7223 DEC 2003


  • Bridge PD, Roberts PJ, Spooner BM, et al.
    On the unreliability of published DNA sequences

    NEW PHYTOLOGIST 160 (1): 43-48 OCT 2003


  • Zhang H, Sekiguchi Y, Hanada S, et al.
    Gemmatimonas aurantiaca gen. nov., sp nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov.

    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 53: 1155-1163 Part 4 JUL 2003


  • DeSantis TZ, Dubosarskiy I, Murray SR, Andersen GL
    Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA

    Bioinformatics Vol 19 No 12 AUGUST 12 2003 1461-1468.


    • Theses (2)

  • Cedric FV Hobel
    Access to Biodiversity and New Genes from Thermophiles by Special Enrichment Methods

    PhD Thesis (2004) Department of Biology University of Iceland, Reykjavik


  • Leah Morgan
    Molecular evidence for microbially-mediated sulfur cycling in the deep subsurface of the Witwatersrand Basin, South Africa

    BA Thesis (2004) Carleton Collage, Northfield, Minnesota


    • Posters (4)

  • John Kirkpatrick1, Brian Oakley2, Clara Fuchsman1, Sujatha Srinivasan2, James T. Staley2, James W. Murray1 (2005)
    Looking at Black Sea Microbial Communities to Understand Ancient Oceans

    1School of Oceanography and 2Department of Microbiology University of Washington, Seattle, WA


  • Nameeta Shah1, Michael Teplitsky2, Len A. Pennacchio, 2,3, Philip Hugenholtz3, Bernd Hamann1, 2, and Inna Dubchak (2005)
    SNP-VISTA: AN INTERACTIVE SNPs VISUALIZATION TOOL

    1Institute for Data Analysis and Visualization (IDAV), Department of Computer Science, University of California, Davis, One Shields Ave., Davis, CA 95616; 2Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron road, Berkeley, CA, 94720; 3DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598


  • Thomas Huber1 and Philip Hugenholtz2 (2004)
    Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

    1ComBinE group, Advanced Computational Modelling Centre, The University of Queensland, Brisbane 4072, Australia, 2DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598


  • Elizabeth K. Costello and Steven K. Schmidt
    Alpine Tundra Soil at Spring Snow Melt Harbors Novel and Abundant Groups of Chloroflexi Bacteria

    Poster N-252 ASM General Meeting 2003
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder


    • Others (1)

  • Meriel Jones
    Chimeras' raise their heads

    Hot off the Press, Microbiology Today (2003) 42-44.